Peer-reviewed papers
Pre-prints
Cáceres, P., Barría, A., Christensen, K. A., Bassini, L. N., Correa, K., Lhorente, J. P., et al.
BioRxiv
2021
2020
Tapia, D., Barría, A., and Yáñez, J. M.
Journal of Fish Diseases, 43:139-146
2019
Mastrochirico-Filho VA, Ariede RB, Freitas MV, Lira LV, Agudelo JF, Pilarski F, Reis Neto R, Yáñez JM, Hashimoto DT.
Aquaculture, 513:734442
Cáceres G, López ME, Cadiz MI, Yoshida GM, Jedlicki AM, Palma-Véjares R, Travisany D, Díaz-Domínguez D, Maass A, Lhorente JP, Soto J, Salas D, Yáñez JM*.
G3 – Genes, Genomes, Genetics, 9:3213-3223
Barría A, Christensen KA, Yoshida GM, Jedlicki A, Lhorente JP, Davidson WS, Yáñez JM*.
Frontiers Genetics. 10: 498
Barría A, Doeschl-Wilson AB, Lhorente JP, Houston RD, Yáñez JM*.
Aquaculture, 511:734207
Bassini LN, Lhorente JP, Oyarzún M, Bangera R, Yáñez JM*, Neira R.
Aquaculture. 510: 276-282
Marín-Nahuelpi, R., Barría, A., Cáceres, P., López, M. E., Bassini, L. N., Lhorente, J. P., Yáñez, J. M.
G3 – Genes, Genomes, Genetics, 9:3833-3841.
López, M. E., Linderoth, T., Norris, A., Lhorente, J. P., Neira, R., and Yáñez, J. M.
Frontiers Genetics 10, 901
Yoshida, G. M., Lhorente, J. P., Correa, K., Soto, J., Salas, D., and Yáñez, J. M.
G3 – Genes, Genomes, Genetics, 8:2597-2607
Yoshida, G. M., Barria, A., Cáceres, G., Correa, K., Jedlicki, A., Cadiz, M. I., et al.
Frontiers Genetics, 10:745
Yáñez, J. M., Yoshida, G. M., Parra, Á., Correa, K., Barría, A., Bassini, L. N., et al.
Frontiers Genetics, 10:665.
Rodríguez Francisco H., Flores-Mara Raúl, Yoshida Grazyella M., Barría Agustín, Jedlicki Ana M., Lhorente Jean P., Reyes-López Felipe, Yáñez José M.
G3 – Genes, Genomes, Genetics, 9(9):2897-2904.
Lhorente, J. P., Araneda, M., Neira, R., and Yáñez, J. M.
Reviews in Aquaculture
2018
Barria A, Lopez ME, Yoshida GM, Carvalheiro R, Lhorente JP, Yáñez JM
Frontiers Genetics
López ME, Benestan L, Moore JS, Perrier C, Gilbey J, Di Genova A, Maass A, Diaz D, Lhorente JP, Correa K, Neira R, Bernatchez L, Yáñez JM
Evolutionary Applications
González C, Yáñez JM, Tadich T
Animals, 8:144
Rodríguez FH, Cáceres G, Lhorente JP, Newman S, Bangera R, Tadich T, Neira R, Yáñez JM.
Animal, 13(4):675-682
Robledo D, Gutiérrez AP, Barría A, Yáñez JM, Houston RD.
Frontiers Genetics 9:287
Yoshida GM, Yáñez JM, Lopes de Oliveira CA, Ribeiro RP, Lhorente JP, Aidar de Queiroz A, Carvalheiro R.
Aquaculture 495,409-414
Yoshida GM, Carvalheiro R, Lhorente JP, Correa K, Figueroa R, Houston R, Yáñez JM.
Aquaculture 491: 147-154
Barría A, Christensen KA, Correa K, Jedlicki A, Lhorente JP, Davidson WS, Yáñez JM.
G3-Genes, Genomes, Genetics 8: 1183-1194
Yoshida GM, Carvalheiro R, Rodriguez F, Lhorente JP, Yáñez JM.
Genomics, 111(2): 127-132
Yoshida GM, Bangera R, Carvalheiro R, Correa K, Figueroa R, Lhorente JP, Yáñez JM.
G3-Genes, Genomes, Genetics, 8: 719-726.
2017
31. Bayesian Genome-wide association study for body weight and average daily gain in Atlantic salmon (Salmo salar).
Yoshida GM, Lhorente JP, Carvalheiro R,Yáñez JM
30. Functional Analysis of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Macqueen DJ, Primmer, C, Houston R, Nowak B, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop B, Lien S, Maass A, Martin S, McGinnity P, Montecino M, Naish K, Nichols K, Ólafsson K, Omholt S, Palti Y, Plastow G, Rexroad 3rd C, Rise M, Ritchie R, Sandve SR, Schulte P, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM.
29. Resistance against infectious pancreatic necrosis exhibits significant genetic variation and is not genetically correlated with harvest weight in rainbow trout (Oncorhynchus mykiss).
Flores-Mara R, Rodríguez FH, Bangera R, Lhorente JP, Neira R, Newman S, Yáñez JM.
28. Mate selection in aquaculture breeding using differential evolution algorithm.
Yoshida GM, Yáñez JM, Lopes de Oliveira CA, Ribeiro RP, Lhorente JP, Aidar de Queiroz S, Carvalheiro R.
27. The use of genomic information increases the reliability of breeding value predictions for sea louse (Caligus rogercresseyi) resistance in Atlantic salmon (Salmo salar).
Correa K, Bangera R, Lhorente JP, Yáñez JM.
25. Genomic predictions can accelerate selection for resistance against Piscirickettsia salmonis Atlantic salmon (Salmo salar).
Bangera R, Correa K, Lhorente JP, Figueroa R, Yáñez JM.
24. Genome wide association study for resistance to Caligus rogercresseyi in Atlantic salmon (Salmo salar L. ) using a 50K SNP genotyping array.
Correa K, Lhorente JP, Bassini L, López ME, Di Génova A, Maass A, Davidson WS, Yáñez JM.
23. Correlated response of flesh color to selection for harvest weight in coho salmon (Oncorhynchus kisutch).
Dufflocq P, Lhorente JP, Bangera R, Neira R, Newman S, Yáñez JM.
2016
22. Assessment of genetic variation for pathogen-specific mastitis resistance in Valle del Belice dairy sheep.
Tolone M, Larrondo C, Yáñez JM, Newman S, Sardina MT, Portolano B.
21. Negative genetic correlation between harvest weight and resistance against Piscirickettsia salmonis in coho salmon (Oncorhynchus kisutch).
Yáñez JM, Bangera R, Lhorente JP, Barría A, Oyarzún M, Neira R, Newman S.
20. Genome wide single nucleotide polymorphism (SNP) discovery in Atlantic salmon (Salmo salar): validation in farmed and wild American and European populations.
Yáñez JM, , Naswa S, López ME, Bassini L, Correa K, Gilbey J, Bernatchez L, Norris A, Neira R, Lhorente JP, Schnable P, Newman N, Mileham A, Deeb N, Di Genova A, Maass A.
19. Evidence of recent signatures of selection during domestication in an Atlantic salmon population.
Gutierrez AP, Yáñez JM, Davidson WS.
18. Characterization of antimicrobial susceptibility and its association to virulence genes related with adherence, invasion and citotoxicity in Campylobacter jejuni and Campylobacter coli isolates from animals, meat and humans.
Lapierre L, Gatica MA, Riquelme V, Vergara C, Yáñez JM, San Martín B, Sáenz L, Vidal M, Martínez MC, Araya P, Flores R.
17. Evaluation of the growth and carcass quality of diallel crosses of four strains of Nile tilapia (Oerochromis niloticus).
Neira R, García X, Lhorente JP, Filp M, Yáñez JM, Cascante AM.
2015
16. Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes.
Correa K, Lhorente JP, López ME, Bassini L, Naswa S, Deeb N, Di Genova A, Maass A, Davidson WS, Yáñez JM.
15. High-throughput transcriptome analysis of ISAV-infected Atlantic salmon Salmo salar unravels divergent immune responses associated to head-kidney, liver and gills tissues.
Valenzuela-Miranda D, Cabrejos ME, Cisterna D, Yáñez JM, Gallardo-Escárate C.
14. Genomics in aquaculture to better understand species biology and accelerate genetic progress.
Yáñez JM, Houston R, Newman S.
13. Genome-wide association study (GWAS) for growth rate and sexual maturation in Atlantic salmon (Salmo salar).
Gutierrez AP, Yáñez JM, Fukui S, Swift B, Davidson WS.
12. Applications in the search for genomic selection signatures in fish.
López ME, Neira R, Yáñez JM.
11. From the viral perspective: Infectious salmon anemia virus (ISAV) transcriptome during the infective process in Atlantic salmon (Salmo salar).
Valenzuela-Miranda D, Cabrejos ME, Yáñez JM, Gallardo-Escárate C.
2014
10. Genetics and genomics of disease resistance in salmonid species.
Yáñez JM, Houston R, Newman S.
9. Effect of triploidy in the expression of immune-related genes in coho salmon (Oncorhynchus kisutch Walbaum) infected with Piscirickettsia salmonis.
Correa K, Filp M, Cisterna D, Cabrejos ME, Gallardo-Escárate C, Yáñez JM.
8. Genetic co-variation between resistance against both Caligus rogercresseyi and Piscirickettsia salmonis, and body weight in Atlantic salmon (Salmo salar).
Yáñez JM, Lhorente JP, Bassini LN, Oyarzún M, Neira R, Newman S.
7. Inbreeding and effective population size in a coho salmon (Oncorhynchus kisutch) breeding nucleus in Chile.
Yáñez JM, Bassini LN, Lhorente JP, Filp M, Ponzoni R, Neira R.
2013
6. Quantitative genetic variation of resistance against Piscirickettsia salmonis in Atlantic salmon (Salmo salar).
Yáñez JM, Bangera R, Lhorente JP, Oyarzún M, Neira R.
5. Characterization of Mycobacterium salmoniphilum as causal agent of mycobacteriosis in Atlantic salmon, Salmo salar L., from a freshwater recirculation system.
Aro L, Correa K, Martínez A, Ildefonso R, Yáñez JM.
4. Assessing footprints of selection in commercial Atlantic salmon populations using microsatellite data.
Martinez V, Detleff P, López P, Fernández G, Jedlicki A, Yáñez JM, Davidson WS.
2007-2010
3. Genetic factors involved in resistance to infectious diseases in salmonids and their application in breeding programmes.
Yáñez JM, Martínez V.
2. Characterization of new microsatellite markers derived from sequence databases for the emu (Dromaius novaehollandiae).
Yáñez JM, González R, Angulo J, Vidal R, Santos JL, Martínez V.
1. The CK1 gene family: expression patterning in zebrafish development.
Albornoz A*, Yáñez JM*, Foerster C, Aguirre C, Pereiro L, Burzio V, Moraga M, Reyes AE, Antonelli M.
Biological Research 40: 251-266
*Both authors contributed equally to this work
Peer-reviewed conference proceedings
Yáñez JM, Naswa S, López ME, Bassini L, Cabrejos ME, Gilbey J, Bernatchez L, Norris A, Soto C, Eisenhart J, Simpson B, Neira R, Lhorente JP, Schnable P, Newman S, Mileham A, Deeb N. 2014.
Development of a 200K SNP Array for Atlantic Salmon: Exploiting Across Continents Genetic Variation. 10th World Congress on Genetics Applied to Livestock Production. Vancouver, Canada (17-22 ago). VER
Gutierrez AP, Yañez JM, Fukui S, Swift B, Davidson WS. 2014.
Genome-wide association study (GWAS) for growth rate and sexual maturation in Atlantic salmon (Salmo salar). 10th World Congress on Genetics Applied to Livestock Production. Vancouver, Canada (17-22 ago). VER
Tolone M, Yáñez JM, Sutera AM, Scatassa ML, Portolano B. 2014.
Assessment of genetic variation for resistance to mastitis in Valle del Belice dairy sheep: a survival analysis approach. 10th World Congress on Genetics Applied to Livestock Production. Vancouver, Canada (17-22 ago). VER
Neira R, Lhorente JP, Newman S, Yáñez JM, Araneda M, Filp M. 2014.
Evolution of Coho Salmon (Oncorhynchus kisutch) Breeding Programs. 10th World Congress on Genetics Applied to Livestock Production. Vancouver, Canada (17-22 ago). VER
Yáñez JM, Smith PA, Manneschi G, Guajardo A, Rojas ME, Larenas J, Díaz S, Valdés M, Martinez V. 2010.
Unravelling genetic co-variation for resistance and tolerance against Piscirickettsia salmonis infection in Atlantic salmon (Salmo salar). 9th World Congress on Genetics Applied to Livestock Production. Leipzig, Germany (1-6 ago). VER
Yáñez JM, Jedlicki AM, Beristain P, Gajardo G, Lubieniecki K, Davidson WS, Martinez V. 2009.
Niveles de diferenciación genética y desequilibrio de ligamiento en el grupo de ligamiento VIII en poblaciones chilenas de salmón del Atlántico (Salmo salar). VII Simposio de Recursos Genéticos para América Latina y el Caribe (SIRGEALC 2009). Pucón, Chile (28-30 oct).
Other publications
Yáñez JM, Correa K, López ME, Bassini L, Bangera R, Lhorente JP. 2015.
Genética y genómica de la resistencia al piojo de mar (Caligus royercresseyi). Salmon Expert. N°33 2015, 80-83.
Yáñez JM, Barría A, Correa K, Bassini L, Lhorente JP. 2015.
Avances en el mejoramiento genético de la resistencia al Síndrome Rickettsial del Salmón (Pisciricketsia salmonis): integrando la información del genoma. Salmon Expert. N°4 2015, 70-74. VER
Araneda M, Del Campo M, Correa K, Erranz F, Lhorente JP, Oyarzún M, Yáñez JM. 2015.
El rol de la genética en la condición sanitaria sustentable. AQUA. 183, 32-35. VER
Lhorente JP, Yáñez JM, Neira R, Araneda M. 2014.
Desarrollo de Herramientas Genómicas para mejorar el impacto económico de los Programas de Mejoramiento en Acuicultura. Revista Versión Diferente: Salmón-Acuícola. Año 11.VER
Yáñez JM, Martínez A, Aro L, Cabrejos ME. 2012.
Aplicación de herramientas moleculares en el mejoramiento genético de peces de cultivo: Evaluación de la condición genética de reproductores. Revista Versión Diferente: Salmón-Acuícola. Año 9, N°16: 48-51. VER